--- layout: post title: "Single-cell analysis" subtitle: "Current best pipeline for scRNA-seq" cover-img: /assets/img/2021-04-22-seurat3_2.png thumbnail-img: /assets/img/2021-04-22-seurat3.png share-img: /assets/img/2021-04-22-seurat3.png tags: seurat R single-cell bioinformatics permalink: single-cell_analysis comments: true --- test1 seurat3_PBMC_satijalab test2

Download data

wget https://cf.10xgenomics.com/samples/cell/pbmc3k/pbmc3k_filtered_gene_bc_matrices.tar.gz tar zxvf pbmc3k_filtered_gene_bc_matrices.tar.gz

stored data @data/